Suggest --huge flag when BrokenProcessPool crash occurs#431
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Suggest --huge flag when BrokenProcessPool crash occurs#431
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…sing Co-authored-by: wdecoster <11660522+wdecoster@users.noreply.github.com>
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[WIP] [NANOPLOT-430] Fix issue related to huge datasets
Suggest --huge flag when BrokenProcessPool crash occurs
Mar 17, 2026
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When processing very large files (e.g. 82GB BAMs) without
--huge, nanoget'sProcessPoolExecutorcan OOM-kill a worker, raisingBrokenProcessPoolwith no actionable guidance for the user.Changes
nanoplot/NanoPlot.py: Importconcurrent.futuresand add a specificexcept concurrent.futures.BrokenExecutorhandler (base class ofBrokenProcessPool) before the genericexcept Exceptionfallback. On match, logs the crash and prints:💬 Send tasks to Copilot coding agent from Slack and Teams to turn conversations into code. Copilot posts an update in your thread when it's finished.