pymutspec-0.0.13

What's Changed

• package healed by @kpotoh in #10
• Parallelization by @kpotoh in #11

Full Changelog: 0.0.11...0.0.13

pymutspec-0.0.11

What's Changed

• Edges sampling by @kpotoh in #9
• barplots with errorbars
• fixed bug that allow short sequences be used in expected freqs calculation
• citation added to readme

Full Changelog: 0.0.10...0.0.11

pymutspec-0.0.10

Features:

• added availability to collect non-syn mutational spectrum
• added a couple of arguments to calculate_mutspec func: scale, drop_underrepresented (this will drop mut types less than 0.9 by default)

Fixes:

• drop Times New Roman from default font for spectrum barplots
• deleted legacy log/doc files from repo
• added few tests for expected mutations collecting funcs
• fix scripts/calculate_mutspec.py : previously it failed when there was no mutations on branches, and reduced mutnum thresholds

pymutspec-0.0.8

• Fixed uncertainty coefficient (phylocoef) calculation: based on only ingroup and geometric mean of distances from root to leaves
• Added little tests for plot functions
• Added few new functions from analysis notebooks, that used to tree spectra analysis
• General test for collect_mutations.py main class

pymutspec-0.0.7

fix calculate_mutspec.py

add some spectra annotation funcs

pymutspec-0.0.6

fix scripts/calculate_mutspec.py and scripts/plot_mutspec.py for pipeline

pymutspec-0.0.5

extend interface of the script collect_mutations.py

pymutspec-0.0.4

f

mutspec-utils-0.0.3

scripts become scripts

mutspec-utils-0.0.1

v0.0.1

scripts update