- CHMMAIRRa.jl is a method for reference-based detection of chimeric adaptive immune receptor repertoire (AIRR) sequences. Available as officially registered Julia package. Bioinformatics, 1st author.
- IgDiscover is a SnakeMake pipeline for analyzing antibody repertoires and discovers new V genes from high-throughput sequencing reads. I added multiple modules, fixed bugs, developed tests, and updated documentation.
- Data analysis repository for my work on a paper where we discovered 4 TCR alleles introgressed from archaic humans we well as doubled the number of the known TCR alleles. Immunity, 2nd author.
- Data analysis repository for my work on a paper where I analyzed monoclonal and repertoire antibody sequencing data to provide mechanistic insight into how vaccination re-elicits infection-induced antibodies. Nature Communications, 1st author.
- Data analysis repository for my work on a paper about VDJ gene usage in IgM repertoires of rhesus and cynomolgus macaques. 1st author publication.
Some of the projects from my PhD are over on GitLab ->
