Merantix

bin/exif_rename

@@ -0,0 +1,8 @@
+#!/usr/bin/env bash
+
+exiftool \
+    -P \
+    -d '%Y-%m-%d-%H-%M' \
+    '-filename<$DateTimeOriginal%-03c.%e' \
+    '-filename<$DateTimeOriginal $Title%-03c.%e' \
+    "$@"

bin/exif_set_title

@@ -0,0 +1,21 @@
+#!/usr/bin/env bash
+
+for VIDEO_FNAME in "$@"
+do
+	TITLE=$(exiftool -s -s -s -XMP:Title "$VIDEO_FNAME")
+
+	echo "$VIDEO_FNAME"
+
+	# Play video
+	totem "$VIDEO_FNAME" 2> /dev/null
+
+	# Ask user for new values
+	read -e -p "Title [$TITLE]: " TITLE
+
+	# Update EXIF if result wasn't blank
+	if [ -n "${TITLE}" ]; then
+		exiftool -overwrite_original \
+			-XMP:Title="$TITLE" \
+			"$VIDEO_FNAME"
+	fi
+done

bin/git-amend

@@ -2,4 +2,4 @@
 #
 # Use the last commit message and amend your stuffs.
 
-git commit --amend -C HEAD
+git commit --amend --no-verify -C HEAD

bin/run.zsh-run

@@ -1 +1,2 @@
 export PATH="$PATH:$DOTFILES/bin"
+export PATH="$PATH:/home/knub/.local/bin"

dircolors/dircolors.symlink

@@ -138,6 +138,7 @@ EIGHTBIT 1
 
 ### By file type
 
+OTHER_WRITABLE 00
 # global default
 NORMAL 00
 # normal file

git/aliases.zsh-run

@@ -3,27 +3,63 @@ alias glog="git log --graph --pretty=format:'%Cred%h%Creset %an: %s - %Creset %C
 alias ga="git add"
 alias ga.="git add ."
 alias gam='git commit --amend'
-alias gp='git push origin HEAD -q'
+alias gp='git push -u origin HEAD -q'
 alias gpf='gp -f'
+alias gpt='git push -u -q origin $(git rev-parse --abbrev-ref HEAD)'
+alias gpd='git push origin --delete'
 alias gl='git --no-pager log --decorate=short --pretty="format:HEAD %C(yellow)%H%n%CresetAuthor: %an <%ae>%nDate:   %ai, %ar%nCommit: %ci %cr%n%n%s%n" -n1'
 alias glr='git pull --rebase --quiet && gl'
 alias grc='git rebase --continue'
-alias gfro='git fetch -q && git reset --hard origin/$(git name-rev --name-only HEAD) && gl'
+alias gfro='git fetch -q && git reset --hard origin/$(git branch --show-current) && gl'
 alias gd='git diff'
 alias gds='git diff --staged'
 alias gc='git commit'
 alias gcempty='git commit -m "" --allow-empty-message'
 alias gca='git commit -a'
 alias gco='git checkout'
 alias gco.='git checkout .'
-alias gcom='git checkout master'
+
+git_checkout_main_or_master() {
+    if git rev-parse --verify master &>/dev/null; then
+        git checkout master
+    else
+        git checkout main
+    fi
+}
+alias gcom='git_checkout_main_or_master'
 alias gcod='git checkout develop'
 alias gb='git branch'
 alias gs='git status -sb'
+alias grpo='git remote prune origin'
+alias grh='git reset HEAD'
 alias gt='git stash'
+alias gtl='git stash list'
+alias gtd='git stash drop'
+alias gbd='git branch -D'
 alias gtlrt='git stash -q && git pull --rebase --quiet && gl && git stash pop -q'
-alias gcaap='git add . && git-amend && gp -f' # git commit all amend push
+alias gcaapf='git add . && git-amend && gp -f' # git commit all amend push force
 alias gassumeunchanged='git ls-files -v | grep "^[[:lower:]]"'
+
+function gpm() {
+    # git post merge cleanup
+    BRANCH=$(git rev-parse --abbrev-ref HEAD)
+
+    if [[ $# -ne 0 ]]
+    then
+        gco $1
+    else
+        gcom
+    fi
+    glr
+    gbd $BRANCH
+    grpo
+}
+function gbackup() {
+    # creates backup branch
+    BRANCH=$(git rev-parse --abbrev-ref HEAD)
+    git checkout -b $BRANCH-backup
+    git checkout $BRANCH
+}
 function gri() {
     git rebase -i "HEAD~$1"
 }
@@ -33,3 +69,6 @@ function vimgitexclude() {
 function vimgitignore() {
     vim + $(git rev-parse --show-toplevel)/.gitignore
 }
+function vimgitconfig() {
+    vim + $(git rev-parse --show-toplevel)/.git/config
+}

git/gitconfig.symlink

@@ -1,6 +1,6 @@
 [user]
 	name = Stefan Bunk
-	email = stefan.bunk@googlemail.com
+	email = stefan@merantix.com
 [alias]
 	count   = !git shortlog -sn
 [color]

installs

@@ -42,3 +42,5 @@ Unison
 
 # Fedora font rendering
 infinality
+
+mediainfo

machine-based/merantix/aliases.zsh-run

@@ -0,0 +1,30 @@
+
+alias cil="gcloud compute instances list"
+alias cid="gcloud compute instances delete"
+alias cista="gcloud compute instances start"
+alias cisto="gcloud compute instances stop"
+
+function cid() {
+	gcloud compute instances list | grep $1 | awk '{print $1}' | xargs -I {} -P 100  gcloud compute instances delete {} --quiet
+}
+
+alias dipython="drun ipython -i /merantix_core/developer_env/ipython_setup.py"
+
+function vimgithook() {
+    vim + $(git rev-parse --show-toplevel)/.git/hooks/pre-commit
+}
+
+function delete_branches() {
+    git branch --list 'benjamin-*' | xargs -r git branch -D
+    git branch --list 'christian-*' | xargs -r git branch -D
+    git branch --list 'dominik_*' | xargs -r git branch -D
+    git branch --list 'filippo-*' | xargs -r git branch -D
+    git branch --list 'gunnar-*' | xargs -r git branch -D
+    git branch --list 'john-*' | xargs -r git branch -D
+    git branch --list 'john_*' | xargs -r git branch -D
+    git branch --list 'jack-*' | xargs -r git branch -D
+    git branch --list 'jacek-*' | xargs -r git branch -D
+    git branch --list 'markus-*' | xargs -r git branch -D
+    git branch --list 'robert-*' | xargs -r git branch -D
+    git branch --list 'thijs-*' | xargs -r git branch -D
+}

machine-based/merantix/helper.zsh-run

@@ -0,0 +1,4 @@
+function merantix_data_sync_with_nautilus() {
+	merantix_data_sync $1
+	nautilus ~/merantix/core/data/$1
+}

machine-based/merantix/homes-and-paths.zsh-run

@@ -1 +1,8 @@
-export PYTHONPATH="/home/knub/Repositories/merantix:"
+export CLOUDSDK_PYTHON=python3
+
+LYNX_DB_URL=postgresql://read_only:UO%EH^P%t4nkRd%W@cloudproxy:5433/lynx
+LYNX_DB_ENV="local"
+
+LYNX_DB_HOST="10.0.0.251"
+LYNX_DB_PROXY_USER="ml_access"
+LYNX_DB_PROXY_HOST="80.158.3.226"

machine-based/merantix/navigation.zsh-run

@@ -1 +1,12 @@
-alias cdmerantix="cd ~/Repositories/merantix"
+alias cdcore="cd ~/merantix/core"
+alias cdpp="cd /merantix_core/data/mx-healthcare-derived/preprocessed"
+alias cdexperiments="cd /merantix_core/data/mx-healthcare-derived/experiments"
+
+function cddata() {
+	if [ "$#" -eq 0 ]
+	then
+		cd ~/merantix/core/data
+	else
+		cd ~/merantix/core/data/$1
+	fi
+}

machine-based/thinkpad/homes-and-paths.zsh-run

@@ -1,17 +0,0 @@
-## PATH
-# export PATH="$PATH:/opt/scala-2.11.5/bin"
-# export PATH="$PATH:/opt/idea-IU-143.1184.17/bin"
-# export PATH="$PATH:/home/knub/.cargo/bin"
-#export PATH="/opt/anaconda3/bin:$PATH"
-
-## JAVA HOME
-#export JAVA_HOME=/usr/lib/jvm/java-1.7.0-openjdk-amd64
-#export JAVA_HOME=/usr/lib/jvm/jdk1.8.0_31
-export JAVA_HOME=/etc/alternatives/java_sdk
-
-## HADOOP_HOME
-export HADOOP_HOME="/home/knub/Programme/hadoop-2.5.1"
-export HADOOP_COMMON_LIB_NATIVE_DIR=$HADOOP_HOME/lib/native
-
-## ANDROID
-export ANDROID_HOME="/opt/android-sdk"

machine-based/thinkpad/navigation.zsh-run

@@ -1,14 +0,0 @@
-alias cdonehundredandeighty="cd ~/Repositories/onehundredandeighty"
-alias cdthesis='cd ~/Repositories/master-thesis/thesis'
-alias cddata='cd ~/Repositories/master-thesis/data'
-alias cdmodels='cd ~/Repositories/master-thesis/models'
-alias cdresults='cd ~/Repositories/master-thesis/results'
-alias cdmaster='cd ~/Repositories/master-thesis'
-alias cdscala='cd ~/Repositories/master-thesis/code/scala'
-alias cdpython='cd ~/Repositories/master-thesis/code/python/knub/thesis'
-alias cdword2vec='cd ~/Repositories/word2vec/trunk'
-alias cdlftm='cd ~/Repositories/LFTM'
-alias cdgaussian='cd ~/Repositories/Gaussian_LDA'
-alias cdtopicvec='cd ~/Repositories/topicvec'
-alias cdshdp='cd ~/Repositories/sHDP'
-alias vimthesis='vim /home/knub/Repositories/master-thesis/thesis/thesis.tex'

setup_machine.sh

@@ -1,6 +1,6 @@
 #!/bin/bash
 
-PACKAGE_MANAGER=dnf
+PACKAGE_MANAGER=apt
 
 set -o xtrace
 
@@ -9,49 +9,40 @@ if ! test -f zsh/antigen/Makefile ; then
 	git submodule update
 fi
 
-if ! grep -q "defaultyes" /etc/dnf/dnf.conf ; then
-	echo "defaultyes=True" | sudo tee -a /etc/dnf/dnf.conf
-fi
-
 sudo $PACKAGE_MANAGER upgrade
 sudo $PACKAGE_MANAGER install \
-	alacarte \
-	autokey-gtk \
 	curl \
 	dconf-editor \
 	htop \
 	powertop \
-	gimp \
 	gitg \
-	gnome-tweak-tool \
+	gnome-tweaks \
 	gparted \
-	gvim \
+	vim-gtk3 \
 	iotop \
-	ImageMagick \
+	imagemagick \
 	inkscape \
 	meld \
+	ncdu \
 	nethogs \
-	rubygem-rake \
-	sl \
-	the_silver_searcher \
+	rake \
+	silversearcher-ag \
 	tree \
-	texlive \
 	tilda \
 	tlp \
 	tlp-rdw \
-	unison \
+	ubuntu-restricted-extras \
+	ubuntu-restricted-addons \
+	unison-gtk \
 	vim \
+	xclip \
 	zsh
 
 
 if ! grep -q "knub:/bin/zsh" /etc/passwd ; then
 	chsh -s /bin/zsh
 fi
 
-if ! dnf repolist | grep -q "home_snwh_paper" ; then
-	sudo dnf config-manager --add-repo http://download.opensuse.org/repositories/home:snwh:paper/Fedora_25/home:snwh:paper.repo
-	sudo dnf install paper-gtk-theme paper-icon-theme
-fi
 
 if ! test -L ~/.zshrc ; then
 	rake install

system/kitty.zsh-run

@@ -0,0 +1,14 @@
+alias icat="kitty +kitten icat --align left"
+
+function show_rocs() {
+	for d in $(gsutil ls "gs://mx-healthcare-derived/experiments/smart_elimination/image/$1/**/roc_curve_screen_detected_cancers.png"); do
+		dataset=${d/*$1\//};
+		dataset=${dataset/\/cancer_detection_task*/};
+		dataset=${dataset:19}
+		echo $dataset | tr a-z A-Z;
+		gsutil cp $d . 2> /dev/null
+		icat roc_curve_screen_detected_cancers.png
+		rm roc_curve_screen_detected_cancers.png
+	done;
+}
+

system/util.zsh-run

@@ -6,7 +6,7 @@ function watchdir() {
 
 # find file, ignore gitignored files
 function ff() {
-	ag -l --nocolor --hidden -g "$1"
+	ag --skip-vcs-ignores -l --nocolor --hidden -g "$1"
 }
 # find file, do not ignore gitignored files
 function ffa() {
@@ -46,3 +46,10 @@ function byobustart() {
 }
 
 alias sum='awk "{ sum += \$1 } END { print sum }"'
+
+function lsdownloads() {
+	ls ~/Downloads
+}
+function rmdownloads() {
+	rm ~/Downloads/*
+}