Basics/plot timeseries

.devcontainer/Dockerfile

@@ -19,4 +19,9 @@ RUN if [ "${NODE_VERSION}" != "none" ]; then su vscode -c "umask 0002 && . /usr/
 
 # [Optional] Uncomment this line to install global node packages.
 # RUN su vscode -c "source /usr/local/share/nvm/nvm.sh && npm install -g <your-package-here>" 2>&1
-RUN apt-get update && apt-get install awscli
+RUN apt-get update && apt-get install awscli -y
+
+RUN echo "alias cd='HOME=/workspaces/hume cd'" >> ~/.bashrc
+RUN echo "alias pinit='touch __init__.py'" >> ~/.bashrc
+
+RUN pip install --upgrade pip && pip install -r requirements.txt && pip install ipykernel

README.md

@@ -0,0 +1,16 @@
+# sEEG Playground
+
+Playground for various techniques in sEEG
+
+## Setup
+The devcontainer is a great way to get setup with the full environment needed to run the scripts.
+
+
+## Imputation
+Simple imputation can be used to infer what's happening inside the hull of sEEG.
+
+## Takens Embedding
+
+## Connectivity Diffusion
+
+## Neural Structure

data/.gitignore

@@ -1 +1,2 @@
 /ds003876-download
+/ds003498-download

data/ds003498-download.dvc

@@ -0,0 +1,5 @@
+outs:
+- md5: fc298a2c9a76c661ce929615db6baac1.dir
+  size: 48040294716
+  nfiles: 2370
+  path: ds003498-download

notebooks/basic_view.py

@@ -0,0 +1,5 @@
+#%%
+import numpy as np
+from bids import BIDSLayout
+
+layout = BIDSLayout(join(get_test_data_path(), "synthetic"))