Author: Brian M. Schilder

README updated: Feb-28-2022

echoLD: LD downloading and processing.

This R package is part of the echoverse suite that supports echolocatoR: an automated genomic fine-mapping pipeline.

If you use echoLD, please cite:

Brian M Schilder, Jack Humphrey, Towfique Raj (2021) echolocatoR: an automated end-to-end statistical and functional genomic fine-mapping pipeline, Bioinformatics; btab658, https://doi.org/10.1093/bioinformatics/btab658

Installation

if(!require("BiocManager")) install.packages("BiocManager")

BiocManager::install("RajLabMSSM/echoLD")
library(echoLD)

Documentation

Website

Getting started

LD reference panels

UK Biobank

1000 Genomes Phase 1

1000 Genomes Phase 3

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Contact

Brian M. Schilder, Bioinformatician II
Raj Lab
Department of Neuroscience, Icahn School of Medicine at Mount Sinai