NB The code collection is no longer accepting new contributions and will not be maintained
The ISMRM Open Science Initiative for Perfusion Imaging (OSIPI) aims to promote the sharing of perfusion imaging software in order to reduce duplication, improve reproducibility and speed up translation. This DCE-DSC-MRI_CodeCollection code library was maintained by Taskforce 2.3 (now closed) of OSIPI and aimed to collect, test and share open-source perfusion imaging code for use in research and software development. Code contributions included modules covering one or more steps within the image processing pipeline, for example T1 mapping, converting signal to concentration and pharmacokinetic modelling. A further aim of OSIPI is to develop a fully tested and harmonised code library, drawing on the contributions within this repository, which can be found here:
https://github.com/OSIPI/osipy
A summary of the repository structure is shown below. More detailed information and documentation is located in the repository wiki
OSIPI/DCE-DSC-MRI_CodeCollection
├── doc
│ └── code_contributions_record.csv # Overview of code contributions
├── src
│ └── original # Original contributed code organized per contribution
│ └── DS_BW_VanderBiltUMC_USA
│ └── JBJA_GUSahlgrenskaSWE
│ └── ...
├── test # Python test files, organised by category
│ └── DCEmodels
│ └── data # data used for testing stored as csv files
│ └── DSCmodels
│ └── data
│ └── ...
│ └── results-meta.json # stores meta-information about csv-results files, used by notebooks
├── notebooks # Jupyter notebooks and markdown files to build the test-results website
├── LICENCE # Apache version 2.0 licence
├── README.md
├── setup.py
Wiki # Information and guidelines
Click here for database of code available with links to code.
The results of the validated code are published on the test-results website, which is hosted via a separate repository.
This is no longer an ongoing project, and no new contributions are being accepted. Development has shifted to the opsipy library and the code collection remains here as a useful resource