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Kingsford-Group

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  1. scallop scallop Public

    Scallop is a reference-based transcriptome assembler for RNA-seq

    C++ 92 17

  2. bloomtree bloomtree Public

    C++ 73 14

  3. squid squid Public

    SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data

    C++ 42 23

  4. kourami kourami Public

    Kourami: Graph-guided assembly for HLA alleles

    Java 39 16

  5. variantstore variantstore Public

    VariantStore: A Large-Scale Genomic Variant Search Index

    C++ 39 6

  6. omhismb2019 omhismb2019 Public

    C++ 23 8

Repositories

Showing 10 of 81 repositories
  • biblint Public

    BibLint -- a system for fixing bibtex databases

    Kingsford-Group/biblint’s past year of commit activity
    Go 21 3 6 0 Updated Feb 2, 2026
  • taserae Public
    Kingsford-Group/taserae’s past year of commit activity
    0 0 0 0 Updated Jan 30, 2026
  • seq2ribo Public
    Kingsford-Group/seq2ribo’s past year of commit activity
    Python 1 MIT 0 0 0 Updated Jan 20, 2026
  • codonmoe Public
    Kingsford-Group/codonmoe’s past year of commit activity
    Python 4 0 0 0 Updated Nov 2, 2025
  • mdsscope Public

    Tools to explore Minimum Decycling Sets (MDSs) of the de Bruijn graph

    Kingsford-Group/mdsscope’s past year of commit activity
    C++ 9 BSD-3-Clause 0 0 0 Updated Sep 11, 2025
  • arcade Public
    Kingsford-Group/arcade’s past year of commit activity
    Python 4 0 0 0 Updated Aug 7, 2025
  • autotunex Public
    Kingsford-Group/autotunex’s past year of commit activity
    Python 1 0 0 0 Updated Jun 15, 2025
  • glitter Public
    Kingsford-Group/glitter’s past year of commit activity
    Go 0 0 0 0 Updated Jun 8, 2024
  • mrngb Public
    Kingsford-Group/mrngb’s past year of commit activity
    Python 0 0 0 0 Updated Mar 11, 2024
  • graphhic Public
    Kingsford-Group/graphhic’s past year of commit activity
    Python 3 BSD-3-Clause 1 0 0 Updated Feb 18, 2024

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